38 Saving Seurat objects

If the seurat object has been changed, for example addition of pseudotime analysis or renaming of clusters, these changes can be saved to the disk using the following buttons

Save all the files in the Env button can be used to save all the Seurat objects with additional information such as cell count, differential gene expression etc., to an .RData file.

This file is available at the Data folder inside the app directory. The folder will automatically open after the data has been successfully written to the disk.

Save current Seurat object button can be used to save the Seurat object alone in an .RDS file. This file also will be written to the Data folder.

Check the save as a copy option if you wish to not overwrite any existing files with the same name.